Schedule

We meet on Wednesday at 3:30pm at POT853 unless otherwise stated.

• May 26th, 2010: Discussion on "Consistency of Topological Moves Based on the Balanced Minimum Evolution Principle of Phylogenetic Inference" lead by David Haws.
• June 9th, 2010: Discussion lead by RY.
• June 17th (Thurs), 2010 at 3pm: Discussion lead by Emily Hicks.
• June 23rd, 2010: Discussion on "Multiple Comparisons of Log-Likelihoods with Applications to Phylogenetic Inference" lead by Elie Arnaoudova.
• June 30th, 2010: Cancel.
• July 7th, 2010: Cancel.
• July 14th, 2010: Discussion lead by RY.
• July 21st, 2010: Discussion lead by Eric O'Neill.
• July 28th, 2010: No meeting.
• August 4th, 2010: Discussion lead by Emily Hicks.
• August 11th, 2010: Discussion lead by David Weisrock and Eric O'Neill.
• August 18th, 2010: Discussion lead by Pat Calie.
• August 25th, 2010: Discuss on MLEs.
• September 8th, 2010: Discussion lead by Dave Haws.
• September 15th, 2010: Discussion lead by Dave Weisrock.
• September 29th, 2010: Discussion led by Pat Calie on `phenologs.' Presentation slides McGary et al (2010)
• October 6th, 2010: There is a possiblity to be canceled (because of Stat Faculty meeting).
• October 13th, 2010: canceled.
• October 20th, 2010: Discussion led by Pat Calie and Chris Schardl.
• October 27th, 2010: Discussion led by Dave Haws and Peter Huggins
• November 3rd, 2010: Discussion led by Eric and Tommy
• November 10th, 2010: Discussion led by Peter and Rudy Phylogeny of gene regulatory networks and A Bayesian Approach to the Evolution of Metabolic Networks on a Phylogeny
• November 17th, 2010: Discussion on Bayesian phylogenetic inference led by Rudy
• November 24th, 2010: no meeting
• December 1st, 2010: no meeting
• December 8th, 2010: Discussion led by Dave Haws on modified SPR moves, Hein, Hill, SPRIT
• December 15th, 2010: Discussion led by Pat Calie.
• December 22nd, 2010: no meeting
• December 29th, 2010: TBA
• January 5th, 2011: no meeting
• January 12th, 2011: no meeting.
• January 19th, 2011: Pat/Chris/Dave Haws present orthoMCL
• January 26th, 2011: Ellie and Justin present their work.
• February 2nd, 2011: no meeting
• February 9th, 2011: Dave Weisrock presents Species Delimitation.
• February 16th, 2011: Pat Calie presents the sequencing and annotation of four representatives of pathogenic fungal lineages.

Reading Materials

Here is the list of reading materials for the group meeting.

• "Consistency of Topological Moves Based on the Balanced Minimum Evolution Principle of Phylogenetic Inference" PDF.
• "Multiple Comparisons of Log-Likelihoods with Applications to Phylogenetic Inference" by Shimodaira and Hasegawa. PDF.
• Slides for July 21st, 2010 PPT and reading materials SITE
• Reading materials for August 4th, 2010 PDF, PDF, PDF. Also PDF and PDF.
• Reading material for August 18th, 2010 PDF and PPTX
• Reading material for August 25th, 2010 PDF
• Reading material for Sept 8th, 2010 Site and PDF